Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 17 curated entries in PaperBLAST's database that match ''.

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0152: Imidazoleglycerol-phosphate dehydratase
is similar to:

BPHYT_RS17700: imidazoleglycerol-phosphate dehydratase (EC from Burkholderia phytofirmans

78% id,
99% cov

HIS7_CRYNJ / P0CO22: Imidazoleglycerol-phosphate dehydratase; IGPD; EC from Cryptococcus neoformans

49% id,
99% cov

HIS5A_ARATH / P34047: Imidazoleglycerol-phosphate dehydratase 1, chloroplastic; IGPD 1; Protein HISTIDINE BIOSYNTHESIS 5A; EC from Arabidopsis thaliana
HISN5A / P34047: imidazoleglycerolphosphate dehydratase (EC from Arabidopsis thaliana

53% id,
72% cov


Psest_0009: histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA
is similar to:

HIS7_ECO57 / Q9S5G5: Histidine biosynthesis bifunctional protein HisB; EC; EC from Escherichia coli

33% id,
41% cov

HisB / b2022: imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase (EC; EC from Escherichia coli
hisB / P06987: imidazoleglycerol-phosphate dehydratase / histidinol-phosphatase (EC; EC from Escherichia coli

32% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory