Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 103 curated entries in PaperBLAST's database that match '4.3.1.1'.

These curated entries have 66 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_4074: Aspartate ammonia-lyase
is similar to:
PaperBLAST

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

86% id,
100% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

57% id,
99% cov

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

55% id,
96% cov

More...

Psest_0784: L-serine dehydratase, iron-sulfur-dependent, single chain form
is similar to:
PaperBLAST

Pf6N2E2_5557: L-serine ammonia-lyase (EC 4.3.1.17) from Pseudomonas fluorescens

81% id,
100% cov

RR42_RS20080: L-serine ammonia-lyase (EC 4.3.1.17) from Cupriavidus basilensis

66% id,
100% cov

BPHYT_RS19340: L-serine ammonia-lyase (EC 4.3.1.17) from Burkholderia phytofirmans

65% id,
100% cov

More...

Psest_3866: threonine ammonia-lyase, biosynthetic, long form
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

52% id,
97% cov

THDH_YEAST / P00927: Threonine dehydratase, mitochondrial; Threonine deaminase; EC 4.3.1.19 from Saccharomyces cerevisiae

51% id,
89% cov

V6QU65: threonine ammonia-lyase (EC 4.3.1.19) from Fusarium graminearum

51% id,
87% cov

More...

Psest_2682: fumarate hydratase, class II
is similar to:
PaperBLAST

Q9LCC6: aspartate ammonia-lyase (EC 4.3.1.1) from Bacillus sp.

42% id,
98% cov

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

41% id,
97% cov

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

40% id,
94% cov

More...

Psest_2636: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

TDCB_SALTY / P11954: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Salmonella typhimurium

22% id,
98% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

27% id,
73% cov

TDCB_ECOLI / P0AGF6: L-threonine dehydratase catabolic TdcB; L-serine dehydratase; Threonine deaminase; EC 4.3.1.19; EC 4.3.1.17 from Escherichia coli
Tdc / b3117: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli
tdcB / RF|NP_417587: threonine ammonia-lyase; EC 4.3.1.19 from Escherichia coli
tdcB / P0AGF6: catabolic threonine dehydratase (EC 4.3.1.17; EC 4.3.1.19) from Escherichia coli

23% id,
62% cov

Psest_0063: tryptophan synthase, beta subunit
is similar to:
PaperBLAST

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

27% id,
68% cov

B1N2N4: L-serine ammonia-lyase (EC 4.3.1.17) from Entamoeba histolytica

28% id,
54% cov

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

24% id,
50% cov

More...

Psest_2551: 1-aminocyclopropane-1-carboxylate deaminase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

33% id,
51% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory