Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 6 curated entries in PaperBLAST's database that match '5.1.1.5' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0699: alanine racemase
is similar to:
PaperBLAST

LYR_PROMI / M4GGR9: Lysine racemase; EC 5.1.1.5 from Proteus mirabilis
M4GGR9: lysine racemase (EC 5.1.1.5) from Proteus mirabilis

26% id,
85% cov

Psest_3639: N-acetyl-gamma-glutamyl-phosphate reductase, common form
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

41% id,
52% cov

Psest_0369: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

C7ACH5: lysine racemase (EC 5.1.1.5) from uncultured bacterium

34% id,
20% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory