Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 174 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 118 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0155: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
is similar to:
PaperBLAST

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

100% id,
100% cov

Pf6N2E2_3839: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

88% id,
100% cov

AO356_09800: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas fluorescens

88% id,
100% cov

More...

Psest_3308: KpsF/GutQ family protein
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

80% id,
99% cov

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli

60% id,
96% cov

KDSD_FRATT / Q5NGP7: Arabinose 5-phosphate isomerase KdsD; API; EC 5.3.1.13 from Francisella tularensis

55% id,
98% cov

More...

Psest_0975: triosephosphate isomerase
is similar to:
PaperBLAST

TPIS_CAEEL / Q10657: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Caenorhabditis elegans
Q10657: triose-phosphate isomerase (EC 5.3.1.1) from Caenorhabditis elegans

50% id,
98% cov

TPIS_ECODH / B1XB85: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
TPIS_ECOLI / P0A858: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Escherichia coli
Tpi / b3919: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
tpiA / P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli
P0A858: triose-phosphate isomerase (EC 5.3.1.1) from Escherichia coli

49% id,
98% cov

TPIS_THET8 / Q5SJR1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Thermus thermophilus

47% id,
100% cov

More...

Psest_0156: imidazoleglycerol phosphate synthase, cyclase subunit
is similar to:
PaperBLAST

BPHYT_RS17685: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Burkholderia phytofirmans

31% id,
96% cov

PS417_01575: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas simiae

30% id,
98% cov

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

30% id,
97% cov

More...

Psest_0330: 3-phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

47% id,
60% cov

Psest_0801: CBS-domain-containing membrane protein
is similar to:
PaperBLAST

KPSF_ECOL6 / Q8FDQ2: Arabinose 5-phosphate isomerase KpsF; API; K-antigen-specific arabinose 5-phosphate isomerase; K-API; EC 5.3.1.13 from Escherichia coli

32% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory