Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 86 curated entries in PaperBLAST's database that match '5.4.99.5'.

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1984: chorismate mutase domain of proteobacterial P-protein, clade 2
is similar to:
PaperBLAST

CMPDT_PSEST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Pseudomonas stutzeri

95% id,
100% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

31% id,
98% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

31% id,
98% cov

More...

Psest_0071: UDP-galactopyranose mutase
is similar to:
PaperBLAST

FCF2_ECOLX / Q6E7F1: dTDP-fucopyranose mutase; dTDP-alpha-D-fucopyranose mutase; EC 5.4.99.59 from Escherichia coli
fcfB / Q6E7F1: dTDP-fucopyranose mutase (EC 5.4.99.59) from Escherichia coli
Q6E7F1: dTDP-fucopyranose mutase (EC 5.4.99.59) from Escherichia coli

38% id,
96% cov

Psest_3650: anthranilate synthase component I, non-proteobacterial lineages
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

30% id,
66% cov

Psest_2326: aminodeoxychorismate synthase, component I, bacterial clade
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

25% id,
79% cov

Psest_2823: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

P39912: chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

29% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory