Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 61 curated entries in PaperBLAST's database that match '5.4.99.5' as complete word(s).

These curated entries have 44 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_1984: chorismate mutase domain of proteobacterial P-protein, clade 2
is similar to:
PaperBLAST

CMPDT_STUST / P27603: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Stutzerimonas stutzeri

95% id,
100% cov

CMPDT_ECOLI / P0A9J8: Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli
PheA / b2599: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli
CH_024084: P-protein; EC 4.2.1.51; EC 5.4.99.5 from Escherichia coli
pheA / P0A9J8: fused chorismate mutase/prephenate dehydratase (EC 5.4.99.5; EC 4.2.1.51) from Escherichia coli

31% id,
98% cov

C7EXK8: prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Escherichia coli

31% id,
98% cov

More...

Psest_3650: anthranilate synthase component I, non-proteobacterial lineages
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

30% id,
66% cov

Psest_2326: aminodeoxychorismate synthase, component I, bacterial clade
is similar to:
PaperBLAST

MBTI_MYCTU / P9WFX1: Salicylate synthase; Chorismate mutase; CM; Isochorismate synthase/isochorismate lyase; Mycobactin synthase protein; EC 5.4.99.5; EC 4.2.99.21; EC 5.4.4.2 from Mycobacterium tuberculosis

25% id,
79% cov

Psest_2823: 3-deoxy-8-phosphooctulonate synthase
is similar to:
PaperBLAST

P39912: 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54); chorismate mutase (EC 5.4.99.5) from Bacillus subtilis

29% id,
63% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory