Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.2' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3751: argininosuccinate lyase
is similar to:
PaperBLAST

Q2HNZ1: 3-Carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) from Agrobacterium tumefaciens

23% id,
77% cov

Psest_2019: adenylosuccinate lyase
is similar to:
PaperBLAST

RR42_RS32055: 3-carboxymuconate cycloisomerase PcaB (EC 5.5.1.2) from Cupriavidus basilensis

28% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory