Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 3 curated entries in PaperBLAST's database that match '5.5.1.27' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0369: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

27% id,
93% cov

Psest_2694: muconate and chloromuconate cycloisomerases
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

26% id,
94% cov

Psest_0376: glucarate dehydratase
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

26% id,
92% cov

Psest_0373: L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily
is similar to:
PaperBLAST

GCI_AGRFC / A9CEQ8: D-galactarolactone cycloisomerase; EC 5.5.1.27 from Agrobacterium fabrum
gci / A9CEQ8: D-galactarolactone cycloisomerase monomer (EC 5.5.1.27) from Agrobacterium fabrum
A9CEQ8: D-galactarolactone cycloisomerase (EC 5.5.1.27) from Agrobacterium tumefaciens

26% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory