Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 193 curated entries in PaperBLAST's database that match '6.2.1.1'.

These curated entries have 146 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_2657: acetate--CoA ligase
is similar to:
PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

82% id,
100% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

81% id,
100% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

66% id,
98% cov

More...

Psest_1086: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

58% id,
97% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

30% id,
95% cov

A0A0D4C3L0: 4-coumarate-CoA ligase (EC 6.2.1.12) from Plagiochasma appendiculatum

30% id,
92% cov

More...

Psest_2220: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
is similar to:
PaperBLAST

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

48% id,
96% cov

ACSA_METTP / A0B8F1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Methanothrix thermoacetophila
A0B8F1: acetate-CoA ligase (EC 6.2.1.1) from Methanothrix thermoacetophila

42% id,
86% cov

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

40% id,
88% cov

More...

Psest_4072: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

31% id,
98% cov

4CL1_ORYSJ / P17814: 4-coumarate--CoA ligase 1; 4CL 1; Os4CL1; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 1; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
P17814: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

28% id,
96% cov

4CL2 / P14913: 4-coumarate--CoA ligase 1 (EC 6.2.1.12) from Petroselinum crispum
P14913: 4-coumarate-CoA ligase (EC 6.2.1.12) from Petroselinum crispum

27% id,
98% cov

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Psest_1335: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

4CLL1_ARATH / Q9LQ12: 4-coumarate--CoA ligase-like 1; 4-coumarate--CoA ligase isoform 10; At4CL10; EC 6.2.1.12 from Arabidopsis thaliana

32% id,
95% cov

CCL1_HUMLU / M4ISH0: 4-coumarate--CoA ligase CCL1; HlCCL1; EC 6.2.1.12 from Humulus lupulus

31% id,
95% cov

P41636: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pinus taeda

29% id,
99% cov

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Psest_2490: succinyl-CoA synthetase, alpha subunit
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus

34% id,
88% cov

Q9Y1N2: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Giardia intestinalis

25% id,
34% cov

C4LUV9: acetate-CoA ligase (ADP-forming) (EC 6.2.1.13) from Entamoeba histolytica

26% id,
31% cov

More...

Psest_4228: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

Ac3H11_3009: Acetoacetate--CoA ligase (EC 6.2.1.16) from Acidovorax sp.

31% id,
93% cov

4CL2_ORYSJ / Q42982: 4-coumarate--CoA ligase 2; 4CL 2; Os4CL2; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 2; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
Q42982: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

33% id,
88% cov

4CL2_TOBAC / O24146: 4-coumarate--CoA ligase 2; 4CL 2; Nt4CL-19; Nt4CL-2; 4-coumaroyl-CoA synthase 2; Caffeate--CoA ligase; Cinnamate--CoA ligase; Ferulate--CoA ligase; EC 6.2.1.12; EC 6.2.1.-; EC 6.2.1.34 from Nicotiana tabacum
O24146: 4-coumarate-CoA ligase (EC 6.2.1.12) from Nicotiana tabacum

30% id,
96% cov

More...

Psest_1334: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

A0A1L7H9K1: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

31% id,
94% cov

D5LLN7: 4-coumarate-CoA ligase (EC 6.2.1.12) from Sorbus aucuparia

30% id,
97% cov

U3MJP5: 4-coumarate-CoA ligase (EC 6.2.1.12) from Pueraria montana

30% id,
95% cov

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Psest_3221: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

30% id,
96% cov

4CL1_ORYSJ / P17814: 4-coumarate--CoA ligase 1; 4CL 1; Os4CL1; (E)-ferulate--CoA ligase; 4-coumaroyl-CoA synthase 1; EC 6.2.1.12; EC 6.2.1.34 from Oryza sativa
P17814: 4-coumarate-CoA ligase (EC 6.2.1.12) from Oryza sativa

31% id,
92% cov

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

29% id,
96% cov

More...

Psest_2477: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

30% id,
95% cov

A0A1L7H9I4: 4-coumarate-CoA ligase (EC 6.2.1.12) from Peucedanum praeruptorum

29% id,
97% cov

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

30% id,
95% cov

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Psest_2444: Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
is similar to:
PaperBLAST

CNL_PETHY / I3PB36: Trans-cinnamate:CoA ligase, peroxisomal; Cinnamic acid:CoA ligase; Ph-CNL; PhCNL; (E)-caffeate:CoA ligase CNL; 4-coumarate:CoA ligase CNL; Protein ACYL-ACTIVATING ENZYME; PhAAE; EC 6.2.1.-; EC 6.2.1.12 from Petunia hybrida
CNL / I3PB36: cinnamate:CoA ligase (EC 6.2.1.12) from Petunia hybrida

29% id,
97% cov

CCL4_HUMLU / M4IQQ5: 2-methylpropanoate--CoA ligase CCL4; HlCCL4; 2-methylbutanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus
CCL4 / M4IQQ5: isobutanoate/2-methylbutanoate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

29% id,
97% cov

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

31% id,
90% cov

More...

Psest_3692: Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases
is similar to:
PaperBLAST

ACSA_HUMAN / Q9NR19: Acetyl-coenzyme A synthetase, cytoplasmic; Acetate--CoA ligase; Acetyl-CoA synthetase; ACS; AceCS; Acetyl-CoA synthetase 1; AceCS1; Acyl-CoA synthetase short-chain family member 2; Acyl-activating enzyme; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Homo sapiens
ACAS2 / Q9NR19: acetyl-coA synthetase (EC 6.2.1.1) from Homo sapiens
Q9NR19: acetate-CoA ligase (EC 6.2.1.1) from Homo sapiens

23% id,
57% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

27% id,
35% cov

ACSA_MOUSE / Q9QXG4: Acetyl-coenzyme A synthetase, cytoplasmic; Acetate--CoA ligase; Acetyl-CoA synthetase; ACS; AceCS; Acetyl-CoA synthetase 1; AceCS1; Acyl-CoA synthetase short-chain family member 2; Acyl-activating enzyme; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Mus musculus

24% id,
23% cov

Psest_3472: Long-chain acyl-CoA synthetases (AMP-forming)
is similar to:
PaperBLAST

ACSL1_HUMAN / P33121: Long-chain-fatty-acid--CoA ligase 1; Acyl-CoA synthetase 1; ACS1; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 1; LACS 1; Long-chain acyl-CoA synthetase 2; LACS 2; Long-chain fatty acid-CoA ligase 2; Palmitoyl-CoA ligase 1; Palmitoyl-CoA ligase 2; Phytanate--CoA ligase; EC 6.2.1.3; EC 6.2.1.15; EC 6.2.1.24 from Homo sapiens
ACSL1 / P33121: long-chain-fatty-acid--CoA ligase 1 (EC 6.2.1.3; EC 6.2.1.15) from Homo sapiens

31% id,
38% cov

ACSL6_HUMAN / Q9UKU0: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; EC 6.2.1.3; EC 6.2.1.15 from Homo sapiens
ACSL6 / Q9UKU0: long-chain acyl-CoA synthetase 6 (EC 6.2.1.15) from Homo sapiens

31% id,
38% cov

ACSL6_RAT / P33124: Long-chain-fatty-acid--CoA ligase 6; Arachidonate--CoA ligase; Long-chain acyl-CoA synthetase 6; LACS 6; Long-chain-fatty-acid--CoA ligase, brain isozyme; EC 6.2.1.3; EC 6.2.1.15 from Rattus norvegicus

31% id,
38% cov

More...

Psest_2491: succinyl-CoA synthetase, beta subunit
is similar to:
PaperBLAST

ACD_METJA / Q58010: Acetate--CoA ligase [ADP-forming]; ADP-forming acetyl coenzyme A synthetase; ACS; EC 6.2.1.13 from Methanocaldococcus jannaschii

27% id,
31% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2663216-2664175 (frame -3) on Psest_Contig47.1
is similar to:
PaperBLAST

ccsB / Q75VW6: citryl-CoA synthetase small subunit (EC 6.2.1.18) from Hydrogenobacter thermophilus
Q75VW6: citrate-CoA ligase (EC 6.2.1.18) from Hydrogenobacter thermophilus
Also see hits to annotated proteins above

33% id,
91% cov

2664100-2665341 (frame -1) on Psest_Contig47.1
is similar to:
PaperBLAST

ACD_METJA / Q58010: Acetate--CoA ligase [ADP-forming]; ADP-forming acetyl coenzyme A synthetase; ACS; EC 6.2.1.13 from Methanocaldococcus jannaschii
Also see hits to annotated proteins above

27% id,
32% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory