Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 6 curated entries in PaperBLAST's database that match 'D-alanine%dehydrogenase' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3793: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

100% id,
100% cov

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

84% id,
100% cov

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

63% id,
100% cov

More...

Psest_2119: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

41% id,
96% cov

DADA1_PSEAE / Q9HTQ0: D-amino acid dehydrogenase 1; D-alanine dehydrogenase 1; EC 1.4.99.- from Pseudomonas aeruginosa

40% id,
96% cov

DADA_ECOLI / P0A6J5: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Escherichia coli

40% id,
95% cov

More...

Psest_0111: Glycine/D-amino acid oxidases (deaminating)
is similar to:
PaperBLAST

Ac3H11_4848: D-alanine dehydrogenase (EC 1.4.99.-) from Acidovorax sp.

34% id,
96% cov

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

34% id,
94% cov

Psest_3793: D-alanine dehydrogenase (EC 1.4.99.-) from Pseudomonas stutzeri

32% id,
94% cov

More...

Psest_3368: glycine oxidase ThiO
is similar to:
PaperBLAST

DADA_KLEAE / O30745: D-amino acid dehydrogenase; D-alanine dehydrogenase; EC 1.4.99.- from Klebsiella aerogenes

29% id,
69% cov

AZOBR_RS08020: D-alanine dehydrogenase (EC 1.4.99.-) from Azospirillum brasilense

28% id,
69% cov

Ac3H11_4848: D-alanine dehydrogenase (EC 1.4.99.-) from Acidovorax sp.

32% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory