Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 5 curated entries in PaperBLAST's database that match 'arginosuccinate lyase' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_3751: argininosuccinate lyase
is similar to:
PaperBLAST

AN2914: arginosuccinate lyase (Eurofung) from Emericella nidulans

44% id,
92% cov

Echvi_3852: arginosuccinate lyase (EC 4.3.2.1) from Echinicola vietnamensis

38% id,
91% cov

CA265_RS18485: arginosuccinate lyase (EC 4.3.2.1) from Pedobacter sp.

36% id,
95% cov

More...

Psest_4074: Aspartate ammonia-lyase
is similar to:
PaperBLAST

BT3733: arginosuccinate lyase (EC 4.3.2.1) from Bacteroides thetaiotaomicron

25% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory