Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 2 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthetase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0968: carbamoyl-phosphate synthase, large subunit
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

76% id,
100% cov

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

49% id,
98% cov

Psest_4085: Biotin carboxylase
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

24% id,
27% cov

Psest_3257: D-alanine--D-alanine ligase
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

25% id,
26% cov

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

22% id,
28% cov

Psest_1019: acetyl-CoA carboxylase, biotin carboxylase subunit
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

22% id,
27% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

25% id,
21% cov

Psest_3137: phosphoribosylglycinamide formyltransferase 2
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

24% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory