Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas stutzeri RCH2 (psRCH2)

Found 9 curated entries in PaperBLAST's database that match 'hisF' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas stutzeri RCH2, or try another query

Psest_0156: imidazoleglycerol phosphate synthase, cyclase subunit
is similar to:
PaperBLAST

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

59% id,
99% cov

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

56% id,
99% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

56% id,
99% cov

More...

Psest_0155: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
is similar to:
PaperBLAST

1h5yA / Q8ZY16: Hisf protein from pyrobaculum aerophilum

31% id,
94% cov

1h5yB / Q8ZY16: Hisf protein from pyrobaculum aerophilum

31% id,
94% cov

HIS6_THET8 / Q7SIB9: Imidazole glycerol phosphate synthase subunit HisF; IGP synthase cyclase subunit; IGP synthase subunit HisF; ImGP synthase subunit HisF; IGPS subunit HisF; EC 4.3.2.10 from Thermus thermophilus

27% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory