Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.203' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1301: UDP-glucose 4-epimerase (EC 5.1.3.2)
is similar to:
PaperBLAST

HSERO_RS23040: D-galacturonate dehydrogenase (EC 1.1.1.203) from Herbaspirillum seropedicae

35% id,
58% cov

URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida

32% id,
63% cov

URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae

31% id,
62% cov

More...

PfGW456L13_30: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

D6Y7Y8: uronate dehydrogenase (EC 1.1.1.203) from Thermobispora bispora

28% id,
56% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory