Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 4 curated entries in PaperBLAST's database that match '1.1.1.43' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2948: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43)
is similar to:
PaperBLAST

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

90% id,
99% cov

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

85% id,
100% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

83% id,
99% cov

More...

PfGW456L13_4945: Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)
is similar to:
PaperBLAST

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

56% id,
98% cov

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

54% id,
100% cov

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

54% id,
99% cov

More...

PfGW456L13_943: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

35% id,
88% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

31% id,
84% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

29% id,
90% cov

PfGW456L13_2961: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

35% id,
88% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

38% id,
78% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

34% id,
81% cov

More...

PfGW456L13_2028: D-lactate dehydrogenase (EC 1.1.1.28)
is similar to:
PaperBLAST

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

34% id,
89% cov

PfGW456L13_1617: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

33% id,
90% cov

PfGW456L13_3497: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

30% id,
94% cov

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

32% id,
83% cov

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

34% id,
77% cov

More...

PfGW456L13_4048: Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)
is similar to:
PaperBLAST

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

30% id,
87% cov

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

29% id,
88% cov

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

26% id,
85% cov

PfGW456L13_2327: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

AO353_26885: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas fluorescens

27% id,
97% cov

kguD / Q5TM04: 2-dehydro-6-phosphogluconate reductase (EC 1.1.1.43) from Pseudomonas fluorescens

27% id,
95% cov

PS417_12555: phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) from Pseudomonas simiae

26% id,
96% cov

More...

PfGW456L13_4494: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

29% id,
70% cov

PfGW456L13_3001: 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44)
is similar to:
PaperBLAST

BPHYT_RS11290: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) from Burkholderia phytofirmans

30% id,
36% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory