Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 24 curated entries in PaperBLAST's database that match '1.1.1.6' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 34 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1214: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

48% id,
94% cov

PfGW456L13_2058: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

36% id,
99% cov

PfGW456L13_3499: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

34% id,
95% cov

PfGW456L13_2522: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

34% id,
95% cov

PfGW456L13_3453: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

33% id,
95% cov

PfGW456L13_2712: Alcohol dehydrogenase (EC 1.1.1.1)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

32% id,
97% cov

PfGW456L13_2733: short-chain dehydrogenase/reductase SDR clustered with dienelactone hydrolase
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

32% id,
96% cov

PfGW456L13_3512: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

33% id,
94% cov

PfGW456L13_2524: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

32% id,
96% cov

PfGW456L13_3401: Putative short-chain dehydrogenase/reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

33% id,
94% cov

PfGW456L13_2981: Probable acyl-CoA dehydrogenase (EC 1.3.99.3)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

32% id,
95% cov

PfGW456L13_3752: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

32% id,
95% cov

PfGW456L13_3933: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

32% id,
94% cov

PfGW456L13_2119: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
96% cov

PfGW456L13_3458: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
95% cov

PfGW456L13_3262: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

30% id,
93% cov

PfGW456L13_3816: 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase (EC 1.3.1.25)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

30% id,
93% cov

PfGW456L13_2288: Citronellol and citronellal dehydrogenase
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

31% id,
93% cov

PfGW456L13_4657: Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase RhlG (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
96% cov

PfGW456L13_2873: D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
95% cov

PfGW456L13_3464: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
95% cov

PfGW456L13_30: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
94% cov

PfGW456L13_3134: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
93% cov

PfGW456L13_2193: Probable short-chain dehydrogenase
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

28% id,
93% cov

PfGW456L13_2345: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

27% id,
95% cov

PfGW456L13_1229: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

28% id,
92% cov

PfGW456L13_437: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

27% id,
94% cov

PfGW456L13_3421: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

27% id,
94% cov

PfGW456L13_2496: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

27% id,
94% cov

PfGW456L13_1672: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

29% id,
78% cov

PfGW456L13_2511: short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

27% id,
85% cov

PfGW456L13_2148: Oxidoreductase, short chain dehydrogenase/reductase family
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

24% id,
91% cov

PfGW456L13_3418: 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100)
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

30% id,
72% cov

PfGW456L13_3171: Short-chain dehydrogenase/reductase SDR
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

22% id,
92% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 32 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory