Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 13 curated entries in PaperBLAST's database that match '1.1.2.4'.

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_944: D-2-hydroxyglutarate dehydrogenase
is similar to:
PaperBLAST

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

35% id,
87% cov

YN53_SCHPO / Q9C1X2: Putative D-lactate dehydrogenase C713.03, mitochondrial; EC 1.1.2.4 from Schizosaccharomyces pombe

35% id,
85% cov

DLD3_YEAST / P39976: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD3; D-2HG--pyruvate transhydrogenase DLD3; (R)-2-hydroxyglutarate--pyruvate transhydrogenase; D-lactate dehydrogenase [cytochrome] 3; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

32% id,
90% cov

More...

PfGW456L13_5130: Alkyldihydroxyacetonephosphate synthase (EC 2.5.1.26)
is similar to:
PaperBLAST

LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens
LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens
Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens

25% id,
87% cov

LDHD_DANRE / F1QXM5: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Danio rerio

28% id,
47% cov

LDHD_MOUSE / Q7TNG8: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Mus musculus

28% id,
45% cov

More...

PfGW456L13_5118: Predicted D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
is similar to:
PaperBLAST

LDHD_HUMAN / Q86WU2: Probable D-lactate dehydrogenase, mitochondrial; DLD; Lactate dehydrogenase D; EC 1.1.2.4 from Homo sapiens
LDHD / Q86WU2: mitochondrial D-lactate dehydrogenase (EC 1.1.2.4) from Homo sapiens
Q86WU2: D-lactate dehydrogenase (cytochrome) (EC 1.1.2.4) from Homo sapiens

29% id,
53% cov

DLD2_YEAST / P46681: D-2-hydroxyglutarate--pyruvate transhydrogenase DLD2; D-2HG--pyruvate transhydrogenase DLD2; Actin-interacting protein 2; D-lactate dehydrogenase [cytochrome] 2, mitochondrial; D-lactate ferricytochrome C oxidoreductase; D-LCR; EC 1.1.99.40; EC 1.1.2.4 from Saccharomyces cerevisiae

25% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory