Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 28 curated entries in PaperBLAST's database that match '1.13.11.27' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2935: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
is similar to:
PaperBLAST

PfGW456L13_2935: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

100% id,
100% cov

P80064: 4-hydroxyphenylpyruvate dioxygenase subunit (EC 1.13.11.27) from Pseudomonas sp.
P80064: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

99% id,
100% cov

AO353_26925: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Pseudomonas fluorescens

98% id,
100% cov

More...

PfGW456L13_5039: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

39% id,
91% cov

PfGW456L13_4584: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)
is similar to:
PaperBLAST

Q8EKK9: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Shewanella oneidensis

33% id,
95% cov

PfGW456L13_1425: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27)
is similar to:
PaperBLAST

Q6KZ98: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Picrophilus torridus

28% id,
98% cov

PfGW456L13_3578: Putative collagenase
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

32% id,
73% cov

PfGW456L13_2485: Putative protease
is similar to:
PaperBLAST

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

35% id,
23% cov

Q9RSJ4: 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) from Salvia miltiorrhiza

33% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory