Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 22 curated entries in PaperBLAST's database that match '1.17.1.8' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_5101: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8)
is similar to:
PaperBLAST

DAPB_ECOLI / P04036: 4-hydroxy-tetrahydrodipicolinate reductase; HTPA reductase; EC 1.17.1.8 from Escherichia coli
DapB / b0031: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
dapB / P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli
P04036: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Escherichia coli

66% id,
97% cov

Q9K1F1: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Neisseria meningitidis

63% id,
98% cov

Q2YJN7: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Brucella abortus

46% id,
99% cov

More...

PfGW456L13_4507: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

39% id,
98% cov

PfGW456L13_3832: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

30% id,
99% cov

PfGW456L13_3142: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

Q3M723: 4-hydroxy-tetrahydrodipicolinate reductase (EC 1.17.1.8) from Trichormus variabilis

25% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory