Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 39 curated entries in PaperBLAST's database that match '1.4.1.2' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3298: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form
is similar to:
PaperBLAST

DHE2_PSEAE / Q9HZE0: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Pseudomonas aeruginosa

83% id,
100% cov

Psest_1944: NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form from Pseudomonas stutzeri

72% id,
100% cov

DHE2_HALED / E1V4J5: NAD-specific glutamate dehydrogenase; NAD-GDH; NAD(+)-dependent glutamate dehydrogenase; EC 1.4.1.2 from Halomonas elongata

52% id,
99% cov

More...

PfGW456L13_1455: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
is similar to:
PaperBLAST

Q9TVN3: glutamate dehydrogenase (EC 1.4.1.2) from Entodinium caudatum

58% id,
99% cov

DHE2_CLOSY / P24295: NAD-specific glutamate dehydrogenase; NAD-GDH; EC 1.4.1.2 from Clostridium symbiosum
P24295: glutamate dehydrogenase (EC 1.4.1.2) from Clostridium symbiosum

55% id,
100% cov

P96110: trimer complex (EC 1.4.1.2) from Thermotoga maritima

33% id,
99% cov

More...

PfGW456L13_4958: Leucine dehydrogenase (EC 1.4.1.9)
is similar to:
PaperBLAST

Q9Y8I4: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum islandicum

29% id,
71% cov

GUDB_BACSU / P50735: Cryptic catabolic NAD-specific glutamate dehydrogenase GudB; NAD-GDH; EC 1.4.1.2 from Bacillus subtilis

29% id,
70% cov

GDH2 / Q38946: glutamate dehydrogenase β subunit (EC 1.4.1.2) from Arabidopsis thaliana

28% id,
69% cov

PfGW456L13_2961: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Q9Y8I4: glutamate dehydrogenase (EC 1.4.1.2) from Pyrobaculum islandicum

27% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory