Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 2 curated entries in PaperBLAST's database that match '1.4.3.10'.

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2439: Monoamine oxidase (1.4.3.4)
is similar to:
PaperBLAST

AO1 / O23349: copper-containing amine oxidase (EC 1.4.3.21; EC 1.4.3.10) from Arabidopsis thaliana

32% id,
98% cov

PfGW456L13_1592: COG3380: Amine oxidase, flavin-containing
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

25% id,
39% cov

PfGW456L13_1103: DgcA Dimethylglycine demethylase subunit A
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

32% id,
26% cov

PfGW456L13_3507: Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

34% id,
19% cov

PfGW456L13_1119: Sarcosine oxidase alpha subunit (EC 1.5.3.1)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

29% id,
22% cov

PfGW456L13_4024: Soluble pyridine nucleotide transhydrogenase (EC 1.6.1.1)
is similar to:
PaperBLAST

puo / P40974: putrescine oxidase subunit (EC 1.4.3.10) from Kocuria rosea

54% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory