Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 23 curated entries in PaperBLAST's database that match '1.4.3.3' as complete word(s).

These curated entries have 20 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1488: Glycine oxidase ThiO (EC 1.4.3.19)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

30% id,
95% cov

Q1AYM8: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

30% id,
47% cov

A0A077JN67: D-amino-acid oxidase (EC 1.4.3.3) from Rubrobacter xylanophilus

30% id,
37% cov

More...

PfGW456L13_1117: Sarcosine oxidase beta subunit (EC 1.5.3.1)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

23% id,
98% cov

PfGW456L13_126: L-pipecolate oxidase (1.5.3.7)
is similar to:
PaperBLAST

thiO / O31616: glycine oxidase monomer (EC 1.4.3.19; EC 1.4.3.3) from Bacillus subtilis

22% id,
93% cov

PfGW456L13_812: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)
is similar to:
PaperBLAST

Q7X2D3: D-amino-acid oxidase (EC 1.4.3.3) from Glutamicibacter protophormiae

46% id,
13% cov

P80324: D-amino-acid oxidase (EC 1.4.3.3) from Rhodotorula toruloides

41% id,
13% cov

PfGW456L13_2734: putative oxygenase subunit
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

44% id,
12% cov

Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

44% id,
12% cov

PfGW456L13_2358: Probable alkylhalidase homolog (EC 3.8.1.1)
is similar to:
PaperBLAST

Q6R4Q9: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

57% id,
8% cov

Q99042: D-amino-acid oxidase (EC 1.4.3.3) from Trigonopsis variabilis

57% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory