Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 14 curated entries in PaperBLAST's database that match '1.5.1.34'.

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4938: Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17)
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

40% id,
100% cov

PfGW456L13_3406: Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140)
is similar to:
PaperBLAST

Q8WTJ2: 6,7-dihydropteridine reductase (EC 1.5.1.34) from Physarum polycephalum

31% id,
93% cov

PfGW456L13_1112: GbcB Glycine betaine demethylase subunit B
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

26% id,
53% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory