Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 7 curated entries in PaperBLAST's database that match '1.5.3.7' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_126: L-pipecolate oxidase (1.5.3.7)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

65% id,
98% cov

PfGW456L13_3923: Nucleoside-diphosphate-sugar epimerases
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

31% id,
91% cov

PfGW456L13_809: Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

27% id,
98% cov

PfGW456L13_3223: Gamma-glutamyl-putrescine oxidase (EC1.4.3.-)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

27% id,
93% cov

PfGW456L13_2575: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

27% id,
80% cov

PfGW456L13_1171: Lysine 2-monooxygenase (EC 1.13.12.2)
is similar to:
PaperBLAST

amaA / Q88CC4: pipecolate oxidase (EC 1.5.3.7) from Pseudomonas putida

25% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory