Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 150 curated entries in PaperBLAST's database that match '2.4.2.1'.

These curated entries have 101 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_788: Orotate phosphoribosyltransferase (EC 2.4.2.10)
is similar to:
PaperBLAST

PYRE_SALTY / P08870: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Salmonella typhimurium

69% id,
100% cov

PYRE_ECOLI / P0A7E3: Orotate phosphoribosyltransferase; OPRT; OPRTase; EC 2.4.2.10 from Escherichia coli
PyrE / b3642: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli
pyrE / P0A7E3: orotate phosphoribosyltransferase (EC 2.4.2.10) from Escherichia coli

68% id,
100% cov

PYRE_YEAST / P13298: Orotate phosphoribosyltransferase 1; OPRT 1; OPRTase 1; EC 2.4.2.10 from Saccharomyces cerevisiae
URA5 / P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae
P13298: orotate phosphoribosyltransferase (EC 2.4.2.10) from Saccharomyces cerevisiae

49% id,
97% cov

More...

PfGW456L13_3935: Amidophosphoribosyltransferase (EC 2.4.2.14)
is similar to:
PaperBLAST

PUR1_ECOLI / P0AG16: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Escherichia coli
Ade / b2312: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli
purF / P0AG16: amidophosphoribosyltransferase (EC 2.4.2.14) from Escherichia coli

64% id,
100% cov

PUR1_YEAST / P04046: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; EC 2.4.2.14 from Saccharomyces cerevisiae
ADE4 / P04046: phosphoribosylpyrophosphate amidotransferase (EC 2.4.2.14) from Saccharomyces cerevisiae

54% id,
99% cov

ade4 / RF|NP_594961.1: amidophosphoribosyltransferase Ade4; EC 2.4.2.14 from Schizosaccharomyces pombe

52% id,
95% cov

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PfGW456L13_1494: COG1496: Uncharacterized conserved protein
is similar to:
PaperBLAST

PURNU_ECOLI / P33644: Purine nucleoside phosphorylase YfiH; Adenosine deaminase YfiH; Polyphenol oxidase YfiH; S-methyl-5'-thioadenosine phosphorylase YfiH; EC 2.4.2.1; EC 3.5.4.4; EC 1.10.3.-; EC 2.4.2.28 from Escherichia coli

56% id,
100% cov

PURNU_GEOS3 / P84138: Purine nucleoside phosphorylase YlmD; Adenosine deaminase YlmD; S-methyl-5'-thioadenosine phosphorylase YlmD; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Geobacillus stearothermophilus

35% id,
93% cov

PURNU_BACTN / Q89ZI8: Purine nucleoside phosphorylase BT_4389; Adenosine deaminase BT_4389; S-methyl-5'-thioadenosine phosphorylase BT_4389; EC 2.4.2.1; EC 3.5.4.4; EC 2.4.2.28 from Bacteroides thetaiotaomicron

29% id,
92% cov

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PfGW456L13_2282: FIG074102: hypothetical protein
is similar to:
PaperBLAST

PPNP_ECOLI / P0C037: Pyrimidine/purine nucleoside phosphorylase; Adenosine phosphorylase; Cytidine phosphorylase; Guanosine phosphorylase; Inosine phosphorylase; Thymidine phosphorylase; Uridine phosphorylase; Xanthosine phosphorylase; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.15; EC 2.4.2.4; EC 2.4.2.3 from Escherichia coli
PpnP / b0391: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.1; EC 2.4.2.2; EC 2.4.2.4; EC 2.4.2.3) from Escherichia coli
ppnP / P0C037: nucleoside phosphorylase PpnP (EC 2.4.2.15; EC 2.4.2.2; EC 2.4.2.1) from Escherichia coli

55% id,
99% cov

PfGW456L13_5082: Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19)
is similar to:
PaperBLAST

NADC_SALTY / P30012: Nicotinate-nucleotide pyrophosphorylase [carboxylating]; Quinolinate phosphoribosyltransferase [decarboxylating]; QAPRTase; EC 2.4.2.19 from Salmonella typhimurium

56% id,
95% cov

NadC / b0109: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli
nadC: nicotinate-nucleotide diphosphorylase, carboxylating; EC 2.4.2.19 from Escherichia coli
nadC / P30011: quinolinate phosphoribosyltransferase (decarboxylating) (EC 2.4.2.19) from Escherichia coli

54% id,
95% cov

Q5XBL7: nicotinate-nucleotide diphosphorylase (carboxylating) (EC 2.4.2.19) from Streptococcus pyogenes

42% id,
96% cov

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PfGW456L13_1221: Anthranilate phosphoribosyltransferase (EC 2.4.2.18)
is similar to:
PaperBLAST

TRPD_XANCP / Q8PD71: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Xanthomonas campestris

48% id,
97% cov

TRPD_THET8 / Q5SH88: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus
TRPD_THETH / P83827: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Thermus thermophilus

42% id,
95% cov

TRPD_MYCTU / P9WFX5: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Mycobacterium tuberculosis
P9WFX5: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Mycobacterium tuberculosis

40% id,
89% cov

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PfGW456L13_4030: 5'-methylthioadenosine phosphorylase (EC 2.4.2.28)
is similar to:
PaperBLAST

TK1482 / Q5JJB8: guanosine phosphorylase (EC 2.4.2.15) from Thermococcus kodakarensis

44% id,
93% cov

salT / B0L7E7: chloro-purine nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica
B0L7E7: purine-nucleoside phosphorylase (EC 2.4.2.1) from Salinispora tropica

44% id,
86% cov

PNPH_PYRFU / Q8U2I1: Probable 6-oxopurine nucleoside phosphorylase; Purine nucleoside phosphorylase; PNP; PfPNP; EC 2.4.2.1 from Pyrococcus furiosus
Q8U2I1: purine-nucleoside phosphorylase (EC 2.4.2.1) from Pyrococcus furiosus

43% id,
87% cov

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PfGW456L13_5001: ATP phosphoribosyltransferase (EC 2.4.2.17)
is similar to:
PaperBLAST

HIS1_ECOLI / P60757: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Escherichia coli
HisG / b2019: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli
hisG / P60757: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli

35% id,
71% cov

HIS1_SALTY / P00499: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Salmonella typhimurium

35% id,
71% cov

Q9PM78: ATP phosphoribosyltransferase (EC 2.4.2.17) from Campylobacter jejuni

32% id,
71% cov

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PfGW456L13_2658: Anthranilate phosphoribosyltransferase like (EC 2.4.2.18)
is similar to:
PaperBLAST

TRPD_SACS2 / P50384: Anthranilate phosphoribosyltransferase; EC 2.4.2.18 from Saccharolobus solfataricus
P50384: anthranilate phosphoribosyltransferase (EC 2.4.2.18) from Saccharolobus solfataricus

24% id,
63% cov

PfGW456L13_1220: Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85)
is similar to:
PaperBLAST

TRPGD_ECOLI / P00904: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Escherichia coli
TrpD / b1263: anthranilate synthase subunit TrpD (EC 2.4.2.18; EC 4.1.3.27) from Escherichia coli
trpD / P00904: anthranilate synthase subunit TrpD (EC 2.4.2.18) from Escherichia coli

42% id,
34% cov

TRPGD_SALTY / P00905: Bifunctional protein TrpGD; EC 4.1.3.27; EC 2.4.2.18 from Salmonella typhimurium

41% id,
34% cov

PfGW456L13_686: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16)
is similar to:
PaperBLAST

PPAT / Q06203: Amidophosphoribosyltransferase (EC 2.4.2.14) from Homo sapiens
Q06203: amidophosphoribosyltransferase (EC 2.4.2.14); pantetheine-phosphate adenylyltransferase (EC 2.7.7.3) from Homo sapiens

28% id,
50% cov

PUR1_BACSU / P00497: Amidophosphoribosyltransferase; ATase; Glutamine phosphoribosylpyrophosphate amidotransferase; GPATase; EC 2.4.2.14 from Bacillus subtilis

29% id,
45% cov

ASE3_ARATH / Q9T0J5: Amidophosphoribosyltransferase 3, chloroplastic; AtATase3; PRPP3; Glutamine phosphoribosylpyrophosphate amidotransferase 3; AtGPRAT3; EC 2.4.2.14 from Arabidopsis thaliana
Q9T0J5: amidophosphoribosyltransferase (EC 2.4.2.14) from Arabidopsis thaliana

32% id,
37% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

777616-779475 (frame +1) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

PPAT / Q06203: Amidophosphoribosyltransferase (EC 2.4.2.14) from Homo sapiens
Q06203: amidophosphoribosyltransferase (EC 2.4.2.14); pantetheine-phosphate adenylyltransferase (EC 2.7.7.3) from Homo sapiens
Also see hits to annotated proteins above

28% id,
51% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory