Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 20 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3934: O-acetylhomoserine sulfhydrylase (EC / O-succinylhomoserine sulfhydrylase (EC
is similar to:

metZ / P55218: O-succinyl-L-homoserine sulfhydrylase (EC from Pseudomonas aeruginosa

83% id,
100% cov

METB_HELPX / Q1M0P5: Cystathionine gamma-synthase; CGS; O-succinylhomoserine (thiol)-lyase; EC from Helicobacter pylori
Q1M0P5: cystathionine gamma-synthase (EC from Helicobacter pylori

40% id,
94% cov

metB / P56069: cystathionine γ-lyase (EC from Helicobacter pylori

40% id,
94% cov


PfGW456L13_3942: Probable type IV pilus assembly FimV-related transmembrane protein
is similar to:

CGS1_ARATH / P55217: Cystathionine gamma-synthase 1, chloroplastic; AtCGS1; METHIONINE OVERACCUMULATION 1; O-succinylhomoserine (thiol)-lyase; EC from Arabidopsis thaliana
CGS1 / P55217: cystathionine γ-synthase (EC from Arabidopsis thaliana

42% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory