Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.27' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3960: Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57)
is similar to:
PaperBLAST

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

51% id,
100% cov

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

47% id,
100% cov

PfGW456L13_4396: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

AspC / b0928: aspartate aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.5; EC 2.6.1.7; EC 2.6.1.3) from Escherichia coli

47% id,
99% cov

TyrB / b4054: tyrosine aminotransferase (EC 2.6.1.57; EC 2.6.1.6; EC 2.6.1.42; EC 2.6.1.1; EC 2.6.1.5; EC 2.6.1.27) from Escherichia coli

43% id,
99% cov

PfGW456L13_3544: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

33% id,
96% cov

PfGW456L13_4923: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
is similar to:
PaperBLAST

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC 2.6.1.1; EC 2.6.1.57; EC 2.6.1.27; EC 2.6.1.42; EC 2.6.1.6) from Escherichia coli

36% id,
86% cov

PfGW456L13_3261: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

25% id,
85% cov

PfGW456L13_4713: N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17)
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

25% id,
86% cov

PfGW456L13_3363: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

24% id,
85% cov

S4UF58: tryptophan transaminase (EC 2.6.1.27) from Malassezia furfur

25% id,
64% cov

PfGW456L13_807: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

A0A0D1E3F3: tryptophan transaminase (EC 2.6.1.27) from Ustilago maydis

25% id,
67% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory