Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 4 curated entries in PaperBLAST's database that match '2.6.1.84' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3206: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

85% id,
99% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

84% id,
100% cov

PfGW456L13_2943: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

73% id,
99% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

70% id,
99% cov

PfGW456L13_1529: Valine--pyruvate aminotransferase (EC 2.6.1.66)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

32% id,
93% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

32% id,
91% cov

PfGW456L13_4856: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

33% id,
89% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

31% id,
91% cov

PfGW456L13_4713: N-succinyl-L,L-diaminopimelate aminotransferase alternative (EC 2.6.1.17)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

32% id,
89% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

31% id,
89% cov

PfGW456L13_1928: Uncharacterized PLP-dependent aminotransferase YfdZ
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

30% id,
91% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

30% id,
90% cov

PfGW456L13_2252: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

28% id,
90% cov

PfGW456L13_3090: putative aminotransferase
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

27% id,
89% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

26% id,
90% cov

PfGW456L13_3292: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

28% id,
81% cov

PfGW456L13_2142: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

25% id,
80% cov

PfGW456L13_3163: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

25% id,
73% cov

PfGW456L13_2947: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

53% id,
27% cov

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

52% id,
27% cov

PfGW456L13_2946: Aspartate aminotransferase (EC 2.6.1.1)
is similar to:
PaperBLAST

ARUH_PSEAE / Q9HUI9: Arginine--pyruvate transaminase AruH; EC 2.6.1.84 from Pseudomonas aeruginosa
aruH / Q9HUI9: L-arginine:pyruvate transaminase subunit (EC 2.6.1.84) from Pseudomonas aeruginosa
Q9HUI9: arginine-pyruvate transaminase (EC 2.6.1.84) from Pseudomonas aeruginosa

47% id,
22% cov

PP_3721: arginine:pyruvate transaminase AruH (EC 2.6.1.84) from Pseudomonas putida

44% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory