Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 25 curated entries in PaperBLAST's database that match '2.7.1.15' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3908: Ribokinase (EC 2.7.1.15)
is similar to:
PaperBLAST

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

89% id,
100% cov

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

81% id,
100% cov

AO353_20835: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

81% id,
100% cov

More...

PfGW456L13_5074: 1-phosphofructokinase (EC 2.7.1.56)
is similar to:
PaperBLAST

HSERO_RS11500: Ribokinase (EC 2.7.1.15) from Herbaspirillum seropedicae

27% id,
93% cov

BWI76_RS00290: Ribokinase (EC 2.7.1.15) from Klebsiella michiganensis

33% id,
35% cov

PfGW456L13_2950: 2-ketogluconate kinase (EC 2.7.1.13)
is similar to:
PaperBLAST

BT2804: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

24% id,
92% cov

BT2803: ribokinase (EC 2.7.1.15) from Bacteroides thetaiotaomicron

26% id,
86% cov

SMc01103: Ribokinase (EC 2.7.1.15) from Sinorhizobium meliloti

23% id,
93% cov

More...

PfGW456L13_195: ADP-heptose synthase (EC 2.7.-.-) / D-glycero-beta-D-manno-heptose 7-phosphate kinase
is similar to:
PaperBLAST

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

25% id,
88% cov

H281DRAFT_01116: deoxyribose kinase (EC 2.7.1.15) from Paraburkholderia bryophila

32% id,
46% cov

BPHYT_RS25805: deoxyribose kinase (EC 2.7.1.15) from Burkholderia phytofirmans

29% id,
46% cov

More...

PfGW456L13_3036: Fructokinase (EC 2.7.1.4)
is similar to:
PaperBLAST

RBSK_ECOLI / P0A9J6: Ribokinase; RK; EC 2.7.1.15 from Escherichia coli
RbsK / b3752: ribokinase (EC 2.7.1.15) from Escherichia coli
rbsK / P0A9J6: ribokinase (EC 2.7.1.15) from Escherichia coli

23% id,
87% cov

PfGW456L13_948: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
is similar to:
PaperBLAST

RBSKI_FRUSL / P83534: Bifunctional ribokinase/ribose-5-phosphate isomerase A; EC 2.7.1.15; EC 5.3.1.6 from Fructilactobacillus sanfranciscensis

33% id,
43% cov

PfGW456L13_2869: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)
is similar to:
PaperBLAST

AO356_00950: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

32% id,
37% cov

Pf1N1B4_6031: Ribokinase (EC 2.7.1.15) from Pseudomonas fluorescens

37% id,
25% cov

RBSK_ARATH / A1A6H3: Ribokinase; AtRBSK; RK; EC 2.7.1.15 from Arabidopsis thaliana
RBSK / A1A6H3: ribokinase (EC 2.7.1.15) from Arabidopsis thaliana

32% id,
22% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory