Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 4 curated entries in PaperBLAST's database that match '3.1.1.68' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2118: L-arabinolactonase (EC 3.1.1.15)
is similar to:
PaperBLAST

Ga0059261_1893: Xylonolactonase (EC 3.1.1.68) from Sphingomonas koreensis

32% id,
92% cov

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
D4GP31: L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii

31% id,
86% cov

PfGW456L13_3471: Transcriptional regulator, IclR family
is similar to:
PaperBLAST

XACC_HALVD / D4GP31: Pentonolactonase XacC; L-arabinonolactonase; Xylono-1,4-lactonase; EC 3.1.1.15; EC 3.1.1.68 from Haloferax volcanii
xacC / D4GP31: D-xylono/L-arabinono-1,4-lactonase (EC 3.1.1.15; EC 3.1.1.68) from Haloferax volcanii
D4GP31: L-arabinonolactonase (EC 3.1.1.15); xylono-1,4-lactonase (EC 3.1.1.68) from Haloferax volcanii

25% id,
86% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory