Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 141 curated entries in PaperBLAST's database that match '3.1.3.3'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 22 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4124: Homoserine kinase (EC 2.7.1.39)
is similar to:
PaperBLAST

THRH_PSEAE / Q9I2Y2: Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa

87% id,
100% cov

THRH_PSESM / Q883R9: Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 from Pseudomonas syringae

92% id,
86% cov

PfGW456L13_172: Phosphoserine phosphatase (EC 3.1.3.3)
is similar to:
PaperBLAST

SERB_STRT2 / Q5M3B3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Streptococcus thermophilus

49% id,
96% cov

SERB_LACLA / Q9CHW3: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Lactococcus lactis

47% id,
96% cov

SERB_IDILO / Q5QXU4: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Idiomarina loihiensis

45% id,
95% cov

More...

PfGW456L13_943: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

52% id,
65% cov

CA265_RS22635: phosphoserine phosphatase (EC 3.1.3.3) from Pedobacter sp.

40% id,
24% cov

PfGW456L13_841: Putative FMN hydrolase (EC 3.1.3.-); 5-Amino-6-(5'-phosphoribitylamino)uracil phosphatase
is similar to:
PaperBLAST

PSP_THET2 / Q72H00: Phosphoserine phosphatase; PSP; EC 3.1.3.3 from Thermus thermophilus

35% id,
83% cov

PfGW456L13_5094: Cell division protein FtsH (EC 3.4.24.-)
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

43% id,
66% cov

PfGW456L13_335: Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11)
is similar to:
PaperBLAST

A8DUA7: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Morus alba

32% id,
75% cov

P46284: sedoheptulose-bisphosphatase (EC 3.1.3.37) from Chlamydomonas reinhardtii

30% id,
77% cov

PfGW456L13_4205: Phosphoserine phosphatase (EC 3.1.3.3)
is similar to:
PaperBLAST

SERB_METJA / Q58989: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Methanocaldococcus jannaschii
Q58989: phosphoserine phosphatase (EC 3.1.3.3) from Methanocaldococcus jannaschii

26% id,
90% cov

SERB_RHOFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Rhodoferax ferrireducens

27% id,
82% cov

SERB_MYCA1 / A0QJI1: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium avium

27% id,
46% cov

More...

PfGW456L13_951: Phosphoserine phosphatase (EC 3.1.3.3)
is similar to:
PaperBLAST

SERB1_MYCTU / P9WGJ3: Phosphoserine phosphatase SerB1; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Mycobacterium tuberculosis

33% id,
70% cov

SERB_RHOFT / Q21YU0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Rhodoferax ferrireducens

25% id,
78% cov

SERB_ECOLI / P0AGB0: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Escherichia coli
SerB / b4388: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli
serB: phosphoserine phosphatase; EC 3.1.3.3 from Escherichia coli
serB / P0AGB0: phosphoserine phosphatase (EC 3.1.3.3) from Escherichia coli

25% id,
48% cov

More...

PfGW456L13_4235: Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73)
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

29% id,
74% cov

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

26% id,
77% cov

PfGW456L13_2554: ATP-dependent protease La (EC 3.4.21.53) Type I
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

23% id,
80% cov

PfGW456L13_4945: Glyoxylate reductase (EC 1.1.1.79) / Glyoxylate reductase (EC 1.1.1.26) / Hydroxypyruvate reductase (EC 1.1.1.81); 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

31% id,
47% cov

PfGW456L13_2028: D-lactate dehydrogenase (EC 1.1.1.28)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
45% cov

PfGW456L13_1617: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

31% id,
45% cov

PfGW456L13_3497: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

25% id,
50% cov

PfGW456L13_2948: 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
43% cov

PfGW456L13_2961: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
42% cov

PfGW456L13_4048: Erythronate-4-phosphate dehydrogenase (EC 1.1.1.290)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

28% id,
41% cov

PfGW456L13_2327: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

23% id,
39% cov

PfGW456L13_4494: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

23% id,
27% cov

PfGW456L13_290: ATP-dependent hsl protease ATP-binding subunit HslU
is similar to:
PaperBLAST

D4GUJ7: nucleotidase (EC 3.1.3.31); proteasome ATPase (EC 5.6.1.5) from Haloferax volcanii

32% id,
18% cov

PfGW456L13_471: Ferric siderophore transport system, periplasmic binding protein TonB
is similar to:
PaperBLAST

SYNJ1_MOUSE / Q8CHC4: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Mus musculus

33% id,
8% cov

SYNJ1_RAT / Q62910: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Rattus norvegicus

29% id,
8% cov

SYNJ1_HUMAN / O43426: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Homo sapiens
SYNJ1 / O43426: synaptojanin 1 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens

30% id,
8% cov

PfGW456L13_823: Uncharacterized protein containing a von Willebrand factor type A (vWA) domain
is similar to:
PaperBLAST

SYNJ_CAEEL / G5ECL2: Synaptojanin; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase; Uncoordinated protein 26; EC 3.1.3.36 from Caenorhabditis elegans

34% id,
7% cov

SYNJ1_HUMAN / O43426: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; EC 3.1.3.36 from Homo sapiens
SYNJ1 / O43426: synaptojanin 1 (EC 3.1.3.56; EC 3.1.3.86; EC 3.1.3.36) from Homo sapiens

34% id,
6% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 23 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1055417-1056760 (frame -1) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

51% id,
68% cov

3288656-3289651 (frame -1) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis
Also see hits to annotated proteins above

28% id,
52% cov

3041429-3041665 (frame -1) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

SYNJ1_BOVIN / O18964: Synaptojanin-1; Synaptic inositol 1,4,5-trisphosphate 5-phosphatase 1; p150; EC 3.1.3.36 from Bos taurus

38% id,
5% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory