Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 182 curated entries in PaperBLAST's database that match '3.2.1.20' as complete word(s).

These curated entries have 139 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3254: Trehalose synthase (EC 5.4.99.16)
is similar to:
PaperBLAST

Psest_0870: Alpha-glucosidase (EC 3.2.1.20) from Pseudomonas stutzeri

33% id,
94% cov

Dshi_1649: alpha-glucosidase / maltase / trehalase / sucrase (EC 3.2.1.48; EC 3.2.1.20; EC 3.2.1.28) from Dinoroseobacter shibae

32% id,
96% cov

Shewana3_2311: Alpha-glucosidase (EC 3.2.1.20) from Shewanella sp.

32% id,
92% cov

More...

PfGW456L13_3824: Muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

23% id,
95% cov

PfGW456L13_2128: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

Q2PCE2: alpha-glucosidase (EC 3.2.1.20) from Ferroplasma acidiphilum

25% id,
73% cov

PfGW456L13_3255: Alpha-amylase (EC 3.2.1.1)
is similar to:
PaperBLAST

MAL1_DROME / P07190: Maltase A1; Larval visceral protein H; EC 3.2.1.20 from Drosophila melanogaster
AAF59089.3: α-glucosidase H (LvpH; RE72980p) (EC 3.2.1.20)

26% id,
23% cov

PfGW456L13_3246: Malto-oligosyltrehalose trehalohydrolase (EC 3.2.1.141)
is similar to:
PaperBLAST

CAB46746.1: α-glucosidase (maltase mal22) (EC 3.2.1.20)

35% id,
16% cov

ABW98683.1: α-glucosidase / binding-toxin receptor (Agm3;AgAgm3) (EC 3.2.1.20)

31% id,
17% cov

PfGW456L13_3248: Malto-oligosyltrehalose synthase (EC 5.4.99.15)
is similar to:
PaperBLAST

MalZ / b0403: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
malZ / P21517: maltodextrin glucosidase (EC 3.2.1.20) from Escherichia coli
P21517: alpha-glucosidase (EC 3.2.1.20) from Escherichia coli

34% id,
14% cov

AIZ92452.1: α-glucosidase Z (EO53_16270;MalZ;b0403) (EC 3.2.1.20)
BAE76183.1: maltodextrin glucosidase (MalZ) (EC 3.2.1.20)

34% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory