Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 520 curated entries in PaperBLAST's database that match '3.2.1.21' as complete word(s).

These curated entries have 437 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4567: Periplasmic beta-glucosidase (EC 3.2.1.21)
is similar to:
PaperBLAST

AAL21070.1: β-glucosidase (BglX;STM2166) (EC 3.2.1.21)

63% id,
100% cov

YohA / b2132: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli
bglX / P33363: β-D-glucoside glucohydrolase, periplasmic (EC 3.2.1.21) from Escherichia coli

62% id,
100% cov

AAA60495.1: β-glucosidase (BglX) (EC 3.2.1.21)

62% id,
97% cov

More...

PfGW456L13_4031: Beta N-acetyl-glucosaminidase (EC 3.2.1.52)
is similar to:
PaperBLAST

AEF56853.1: β-glucosidase A3 (EC 3.2.1.21)

29% id,
45% cov

NAG3_CELFI / Q7WUL3: Beta-N-acetylglucosaminidase/beta-glucosidase; 3-beta-N-acetyl-D-glucosaminidase/beta-D-glucosidase; Nag3; EC 3.2.1.21; EC 3.2.1.52 from Cellulomonas fimi
AAQ05801.1: bifunctional N-acetyl-β-glucosaminidase/β-glucosidase (Nag3) (acts as a phosphorylase in presence of phosphate) (Nag3A) (EC 3.2.1.21|3.2.1.52|2.4.1.-)

26% id,
46% cov

ABL78891.1: β-glucosidase (Bgl;TpBgl;Tpen_1494) (EC 3.2.1.21)
A1S0B1: beta-glucosidase (EC 3.2.1.21) from Thermofilum pendens

29% id,
38% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4174506-4175393 (frame +3) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

psu1 / RF|NP_593500.1: cell wall protein Psu1, beta-glucosidase (predicted); EC 3.2.1.21 from Schizosaccharomyces pombe

32% id,
29% cov

924062-925108 (frame +2) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

bglD: probable beta-glucosidase D; EC 3.2.1.21 from Emericella nidulans
Also see hits to annotated proteins above

29% id,
17% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory