Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 319 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 250 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4567: Periplasmic beta-glucosidase (EC
is similar to:

ADT80794.1: α-L-arabinopyranosidase / β-galactosidase (Apy;Apy-H1) (EC|3.2.1.-)

30% id,
79% cov

PfGW456L13_4623: hydrolase, putative
is similar to:

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC

35% id,
23% cov

EFB02686.1: β-galactosidase (VadG925;Vvad_PD3900) (EC

29% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory