Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 12 curated entries in PaperBLAST's database that match '3.5.1.94'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1036819-1037208 (frame +1) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

Pf6N2E2_4510: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

49% id,
45% cov

AO356_13140: Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) from Pseudomonas fluorescens

49% id,
45% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory