Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 50 curated entries in PaperBLAST's database that match '3.5.3.1' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2689: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

ARGI_BACCD / P53608: Arginase; EC 3.5.3.1 from Bacillus caldovelox

31% id,
98% cov

ARGI_BACSU / P39138: Arginase; EC 3.5.3.1 from Bacillus subtilis
P39138: arginase (EC 3.5.3.1) from Bacillus subtilis

27% id,
99% cov

ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula

31% id,
87% cov

More...

PfGW456L13_4435: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

ARGI1_ORYSI / B8AU84: Arginase 1, mitochondrial; Arginine amidohydrolase 1; EC 3.5.3.1 from Oryza sativa

35% id,
80% cov

ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula

33% id,
84% cov

ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana
arginase / P46637: arginase (EC 3.5.3.1) from Arabidopsis thaliana

33% id,
83% cov

More...

PfGW456L13_2989: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

ARGI_MEDTR / G7JFU5: Arginase, mitochondrial; Agmatinase ARGAH; Arginine amidohydrolase; MtARGAH; EC 3.5.3.1; EC 3.5.3.11 from Medicago truncatula

32% id,
88% cov

O08701: arginase (EC 3.5.3.1) from Rattus norvegicus

29% id,
90% cov

ARGI1_ARATH / P46637: Arginase 1, mitochondrial; Agmatinase ARGAH1; Arginine amidohydrolase 1; AtARGAH1; EC 3.5.3.1; EC 3.5.3.11 from Arabidopsis thaliana
arginase / P46637: arginase (EC 3.5.3.1) from Arabidopsis thaliana

30% id,
82% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory