Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 20 curated entries in PaperBLAST's database that match '3.5.3.11' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4435: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

SPEB_HUMAN / Q9BSE5: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

62% id,
89% cov

W5PHZ9: agmatinase (EC 3.5.3.11) from Ovis aries

64% id,
86% cov

SPEB_MOUSE / A2AS89: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Mus musculus

61% id,
84% cov

More...

PfGW456L13_2989: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

56% id,
90% cov

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

55% id,
90% cov

SPEB_HUMAN / Q9BSE5: Agmatinase, mitochondrial; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Homo sapiens
AGMAT / Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens
Q9BSE5: agmatinase (EC 3.5.3.11) from Homo sapiens

45% id,
83% cov

More...

PfGW456L13_2689: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis

35% id,
94% cov

AGMT_PYRHO / O57839: Agmatinase; EC 3.5.3.11 from Pyrococcus horikoshii

34% id,
93% cov

SPEBH_THEKO / Q5JI38: N(1)-aminopropylagmatine ureohydrolase; Agmatinase; Protein SpeB homolog; EC 3.5.3.24; EC 3.5.3.11 from Thermococcus kodakarensis

32% id,
95% cov

More...

PfGW456L13_2993: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

SPEB_ECOLI / P60651: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Escherichia coli
SpeB / b2937: agmatinase (EC 3.5.3.11) from Escherichia coli
speB / RF|NP_417412: agmatinase; EC 3.5.3.11 from Escherichia coli
speB / P60651: agmatinase (EC 3.5.3.11) from Escherichia coli

64% id,
16% cov

SPEB_PROMI / Q7X3P1: Agmatinase; Agmatine ureohydrolase; AUH; EC 3.5.3.11 from Proteus mirabilis

56% id,
16% cov

speB / P70999: agmatinase (EC 3.5.3.11) from Bacillus subtilis

40% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory