Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 19 curated entries in PaperBLAST's database that match '3.5.3.12' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_397: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

90% id,
99% cov

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
aguA / Q9I6J9: agmatine deiminase subunit (EC 3.5.3.12) from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

78% id,
100% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

56% id,
100% cov

More...

PfGW456L13_3370: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

AGUA_PSEAE / Q9I6J9: Agmatine deiminase; Agmatine iminohydrolase; EC 3.5.3.12 from Pseudomonas aeruginosa
aguA / Q9I6J9: agmatine deiminase subunit (EC 3.5.3.12) from Pseudomonas aeruginosa
Q9I6J9: agmatine deiminase (EC 3.5.3.12) from Pseudomonas aeruginosa

51% id,
98% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

49% id,
99% cov

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

48% id,
98% cov

More...

PfGW456L13_2704: N-carbamoylputrescine amidase (3.5.1.53)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

48% id,
98% cov

PfGW456L13_2703: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

O86509: agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor

40% id,
99% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

40% id,
99% cov

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

40% id,
96% cov

More...

PfGW456L13_2706: Agmatine deiminase (EC 3.5.3.12)
is similar to:
PaperBLAST

O86509: agmatine deiminase (EC 3.5.3.12) from Streptomyces coelicolor

40% id,
98% cov

AGUA_MEDTR / G7JT50: Agmatine deiminase; Agmatine iminohydrolase; MtAIH; EC 3.5.3.12 from Medicago truncatula

36% id,
97% cov

AO356_10030: Agmatine deiminase (EC 3.5.3.12) from Pseudomonas fluorescens

36% id,
96% cov

More...

PfGW456L13_2675: 5-aminopentanamidase (EC 3.5.1.30)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

31% id,
98% cov

PfGW456L13_1170: 5-aminopentanamidase (EC 3.5.1.30)
is similar to:
PaperBLAST

Q89413: agmatine deiminase (EC 3.5.3.12) from Chlorella virus

29% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory