Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 8 curated entries in PaperBLAST's database that match '3.5.3.7' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4435: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

gbuA / Q88EE2: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida

92% id,
99% cov

GBUA_PSEAE / Q9I3S3: Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa
gbuA / Q9I3S3: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas aeruginosa

90% id,
100% cov

gbuA / A0A0A1DPD5: 5-guanidino-2-oxopentanoate ureohydrolase (EC 3.5.3.7) from Nocardioides simplex

46% id,
98% cov

More...

PfGW456L13_2989: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

gbuA / A0A0A1DPD5: 5-guanidino-2-oxopentanoate ureohydrolase (EC 3.5.3.7) from Nocardioides simplex

43% id,
95% cov

GBUA_PSEAE / Q9I3S3: Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa
gbuA / Q9I3S3: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas aeruginosa

44% id,
93% cov

gbuA / Q88EE2: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida

44% id,
92% cov

More...

PfGW456L13_2689: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

gbuA / Q88EE2: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas putida

34% id,
93% cov

gbuA / A0A0A1DPD5: 5-guanidino-2-oxopentanoate ureohydrolase (EC 3.5.3.7) from Nocardioides simplex

33% id,
94% cov

GBUA_PSEAE / Q9I3S3: Guanidinobutyrase; EC 3.5.3.7 from Pseudomonas aeruginosa
gbuA / Q9I3S3: guanidinobutyrase subunit (EC 3.5.3.7) from Pseudomonas aeruginosa

34% id,
90% cov

More...

PfGW456L13_2993: Agmatinase (EC 3.5.3.11)
is similar to:
PaperBLAST

gbuA / A0A0A1DPD5: 5-guanidino-2-oxopentanoate ureohydrolase (EC 3.5.3.7) from Nocardioides simplex

59% id,
16% cov

gbh / Q8KZT5: guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp.
Q8KZT5: D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) from Arthrobacter sp.

60% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2988741-2989760 (frame +3) on scaffold1/0|quiver|pilon
is similar to:
PaperBLAST

gbh / Q8KZT5: guanidinobutyrase subunit (EC 3.5.3.7) from Arthrobacter sp.
Q8KZT5: D-arginase (EC 3.5.3.10); guanidinobutyrase (EC 3.5.3.7) from Arthrobacter sp.
Also see hits to annotated proteins above

36% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory