Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 4 curated entries in PaperBLAST's database that match '3.5.99.5' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3117: putative amidase
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

32% id,
96% cov

PfGW456L13_3652: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

30% id,
97% cov

PfGW456L13_3622: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

31% id,
94% cov

PfGW456L13_3755: Amidase (EC 3.5.1.4)
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

36% id,
77% cov

PfGW456L13_2865: Bona fide RidA/YjgF/TdcF/RutC subgroup
is similar to:
PaperBLAST

AMND_PSESP / Q9KWS2: 2-aminomuconate deaminase; EC 3.5.99.5 from Pseudomonas sp.
amnD / Q9KWS2: 2-aminomuconate deaminase monomer (EC 3.5.99.5) from Pseudomonas sp.

30% id,
89% cov

PfGW456L13_5035: Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7)
is similar to:
PaperBLAST

CNBH_COMTE / Q38M35: 2-amino-5-chloromuconic acid deaminase; 2-aminomuconate deaminase; EC 3.5.99.5 from Comamonas testosteroni

34% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory