Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 47 curated entries in PaperBLAST's database that match '4.1.1.17' as complete word(s).

These curated entries have 34 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3336: Lysine decarboxylase, inducible (EC 4.1.1.18)
is similar to:
PaperBLAST

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

34% id,
97% cov

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

35% id,
93% cov

P43099: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus saerimneri

34% id,
93% cov

More...

PfGW456L13_3776: Arginine decarboxylase (EC 4.1.1.19) / Ornithine decarboxylase (EC 4.1.1.17)
is similar to:
PaperBLAST

SpeC / b2965: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
speC / P21169: constitutive ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli
P21169: ornithine decarboxylase (EC 4.1.1.17) from Escherichia coli

32% id,
99% cov

H8ZI01: ornithine decarboxylase (EC 4.1.1.17) from Lactobacillus brevis

34% id,
92% cov

A4Q8H0: ornithine decarboxylase (EC 4.1.1.17) from Serratia liquefaciens

33% id,
93% cov

More...

PfGW456L13_5067: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
is similar to:
PaperBLAST

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

32% id,
90% cov

Q58P26: ornithine decarboxylase (EC 4.1.1.17) from Entamoeba histolytica

29% id,
94% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

32% id,
80% cov

More...

PfGW456L13_845: Diaminopimelate decarboxylase (EC 4.1.1.20)
is similar to:
PaperBLAST

G4XUJ8: ornithine decarboxylase (EC 4.1.1.17) from Erythroxylum coca

28% id,
80% cov

DCOR_CAEEL / P41931: Ornithine decarboxylase; ODC; EC 4.1.1.17 from Caenorhabditis elegans

26% id,
84% cov

AN3846: ornithine decarboxylase; EC 4.1.1.17 from Emericella nidulans

26% id,
82% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory