Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 22 curated entries in PaperBLAST's database that match '4.1.1.18' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_3336: Lysine decarboxylase, inducible (EC 4.1.1.18)
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

81% id,
100% cov

Q87KT6: lysine decarboxylase (EC 4.1.1.18) from Vibrio parahaemolyticus

41% id,
98% cov

A0A0H3FP92: lysine decarboxylase (EC 4.1.1.18) from Klebsiella aerogenes

44% id,
89% cov

More...

PfGW456L13_3776: Arginine decarboxylase (EC 4.1.1.19) / Ornithine decarboxylase (EC 4.1.1.17)
is similar to:
PaperBLAST

LDCA_PSEAE / Q9I2S7: Lysine decarboxylase LdcA; EC 4.1.1.18 from Pseudomonas aeruginosa

45% id,
98% cov

Q9Z4R7: lysine decarboxylase (EC 4.1.1.18) from Eikenella corrodens

39% id,
98% cov

Q87KT6: lysine decarboxylase (EC 4.1.1.18) from Vibrio parahaemolyticus

40% id,
97% cov

More...

PfGW456L13_132: Lysine decarboxylase family
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

47% id,
89% cov

PfGW456L13_845: Diaminopimelate decarboxylase (EC 4.1.1.20)
is similar to:
PaperBLAST

A0A0H3H393: lysine decarboxylase (EC 4.1.1.18) from Klebsiella oxytoca

35% id,
98% cov

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium

26% id,
95% cov

PfGW456L13_5067: Ornithine decarboxylase (EC 4.1.1.17) / Arginine decarboxylase (EC 4.1.1.19)
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium

33% id,
91% cov

ODC_NICGU / Q9FPK5: Ornithine decarboxylase, chloroplastic; Lysine decarboxylase; EC 4.1.1.17; EC 4.1.1.18 from Nicotiana glutinosa

31% id,
65% cov

PfGW456L13_4666: Decarboxylase family protein
is similar to:
PaperBLAST

A0A2Z4EVE5: lysine decarboxylase (EC 4.1.1.18) from Morus alba

28% id,
84% cov

PfGW456L13_43: Biosynthetic arginine decarboxylase (EC 4.1.1.19)
is similar to:
PaperBLAST

ldc / O50657: L-lysine decarboxylase monomer (EC 4.1.1.18) from Selenomonas ruminantium

22% id,
66% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory