Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 10 curated entries in PaperBLAST's database that match '4.1.2.17' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4163: Methylthioribulose-1-phosphate dehydratase (EC 4.2.1.109)
is similar to:
PaperBLAST

FUCA_METJA / Q58813: L-fuculose phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Methanocaldococcus jannaschii
MJ1418 / Q58813: fuculose-1-phosphate aldolase subunit (EC 4.1.2.17) from Methanocaldococcus jannaschii
Q58813: L-fuculose-phosphate aldolase (EC 4.1.2.17) from Methanocaldococcus jannaschii

26% id,
91% cov

BT1274: L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase from Bacteroides thetaiotaomicron

30% id,
42% cov

PfGW456L13_3216: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
is similar to:
PaperBLAST

FUCA_METJA / Q58813: L-fuculose phosphate aldolase; L-fuculose-1-phosphate aldolase; EC 4.1.2.17 from Methanocaldococcus jannaschii
MJ1418 / Q58813: fuculose-1-phosphate aldolase subunit (EC 4.1.2.17) from Methanocaldococcus jannaschii
Q58813: L-fuculose-phosphate aldolase (EC 4.1.2.17) from Methanocaldococcus jannaschii

25% id,
77% cov

PfGW456L13_2326: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases
is similar to:
PaperBLAST

BT1274: L-fuculose-1-phosphate aldolase FucA (4.1.2.17); D-ribulose-1-phosphate aldolase from Bacteroides thetaiotaomicron

24% id,
58% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory