Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1114: Low-specificity L-threonine aldolase (EC 4.1.2.48)
is similar to:
PaperBLAST

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

89% id,
100% cov

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

39% id,
93% cov

O13427: low-specificity L-threonine aldolase (EC 4.1.2.48) from Candida albicans

27% id,
83% cov

PfGW456L13_1451: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

74% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

60% id,
94% cov

PfGW456L13_2685: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

72% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

59% id,
95% cov

PfGW456L13_1116: Serine hydroxymethyltransferase (EC 2.1.2.1)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

71% id,
100% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

61% id,
94% cov

PfGW456L13_1979: Low-specificity L-threonine aldolase (EC 4.1.2.48)
is similar to:
PaperBLAST

ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei

59% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

58% id,
99% cov

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

45% id,
97% cov

More...

PfGW456L13_3132: Low-specificity L-threonine aldolase (EC 4.1.2.48)
is similar to:
PaperBLAST

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

51% id,
99% cov

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

46% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory