Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)
Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).
These curated entries have 16 distinct sequences.
Running ublast with E ≤ 0.01
Found 7 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query
| PfGW456L13_4472: Cysteine synthase (EC 2.5.1.47) is similar to: | PaperBLAST |
F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum | 39% id, 97% cov |
cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori | 39% id, 97% cov |
Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis | 43% id, 67% cov |
| PfGW456L13_2032: Cysteine synthase B (EC 2.5.1.47) is similar to: | PaperBLAST |
F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum | 36% id, 99% cov |
cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori | 35% id, 98% cov |
Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis | 40% id, 65% cov |
| PfGW456L13_3934: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) is similar to: | PaperBLAST |
CTH / P32929: cystathionine γ-lyase monomer (EC 4.4.1.1; EC 4.4.1.2; EC 4.2.1.22) from Homo sapiens | 36% id, 94% cov |
| PfGW456L13_3031: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to: | PaperBLAST |
cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori | 26% id, 95% cov |
| PfGW456L13_949: Threonine dehydratase biosynthetic (EC 4.3.1.19) is similar to: | PaperBLAST |
cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori | 29% id, 59% cov |
CBS / A0A563XPB1: cystathionine β-synthase (EC 4.2.1.22) from Gallus gallus | 31% id, 39% cov |
CBS_HUMAN / P35520: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Homo sapiens | 31% id, 38% cov |
| PfGW456L13_2471: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) is similar to: | PaperBLAST |
Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus | 33% id, 31% cov |
| PfGW456L13_1377: Magnesium and cobalt efflux protein CorC is similar to: | PaperBLAST |
Q3TWN3: cystathionine beta-synthase (EC 4.2.1.22) from Mus musculus | 30% id, 21% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 8 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 5382302-5383846 (frame -1) on scaffold1/0|quiver|pilon is similar to: | PaperBLAST |
Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus | 27% id, 97% cov |
| 3040472-3040993 (frame +2) on scaffold1/0|quiver|pilon is similar to: | PaperBLAST |
Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus | 31% id, 57% cov |
Lawrence Berkeley National Laboratory