Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 1 curated entries in PaperBLAST's database that match '4.2.1.52' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_4507: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

43% id,
96% cov

PfGW456L13_3832: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

31% id,
100% cov

PfGW456L13_3142: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

30% id,
100% cov

PfGW456L13_4553: 4-hydroxy-tetrahydrodipicolinate synthase (EC 4.3.3.7)
is similar to:
PaperBLAST

dapA2: dihydrodipicolinate synthase; EC 4.2.1.52 from Bacillus anthracis

30% id,
91% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory