Curated BLAST for Genomes

 

Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 9 curated entries in PaperBLAST's database that match '4.2.1.6' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2128: Galactonate dehydratase (EC 4.2.1.6)
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

80% id,
100% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli

62% id,
100% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

50% id,
100% cov

More...

PfGW456L13_3320: L-arabonate dehydratase (EC 4.2.1.25)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

65% id,
98% cov

PfGW456L13_3725: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

35% id,
93% cov

PfGW456L13_1889: Phosphogluconate dehydratase (EC 4.2.1.12)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

32% id,
84% cov

PfGW456L13_3824: Muconate cycloisomerase (EC 5.5.1.1)
is similar to:
PaperBLAST

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

28% id,
89% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

27% id,
91% cov

DGOD_ECOLI / Q6BF17: D-galactonate dehydratase; GalD; EC 4.2.1.6 from Escherichia coli
YidU / b4478: D-galactonate dehydratase (EC 4.2.1.140; EC 4.2.1.6) from Escherichia coli
dgoD / RF|YP_026237: D-galactonate dehydratase; EC 4.2.1.6 from Escherichia coli

26% id,
91% cov

More...

PfGW456L13_3930: Gluconate dehydratase (EC 4.2.1.39)
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

34% id,
70% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

32% id,
70% cov

GAD_SACS2 / Q97U27: D-gluconate/D-galactonate dehydratase; GAD; GNAD; EC 4.2.1.140; EC 4.2.1.39; EC 4.2.1.6 from Saccharolobus solfataricus

25% id,
86% cov

More...

PfGW456L13_973: Dihydroxy-acid dehydratase (EC 4.2.1.9)
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

31% id,
62% cov

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

35% id,
39% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory