Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 10 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_2504: 4-oxalocrotonate decarboxylase (EC
is similar to:

xylJ / P23107: 2-oxopent-4-enoate hydratase subunit (EC from Pseudomonas putida

63% id,
100% cov

cnbE / Q38M38: 2-oxopent-4-enoate hydratase (EC from Comamonas testosteroni

56% id,
91% cov

MHPD_COMTE / Q9S156: 2-keto-4-pentenoate hydratase; 2-hydroxypentadienoic acid hydratase; EC from Comamonas testosteroni

43% id,
97% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory