Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 22 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1724: Threonine synthase (EC
is similar to:

Q8YFS0: threonine synthase (EC from Brucella melitensis

57% id,
100% cov

THRC_CORGL / P23669: Threonine synthase; TS; EC from Corynebacterium glutamicum

44% id,
98% cov

Q2SWH9: threonine synthase (EC from Burkholderia thailandensis

43% id,
99% cov


The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2234953-2235939 (frame +1) on scaffold1/0|quiver|pilon
is similar to:

THRC_MYCTU / P9WG59: Threonine synthase; TS; EC from Mycobacterium tuberculosis
P9WG59: threonine synthase (EC from Mycobacterium tuberculosis

32% id,
42% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory