Curated BLAST for Genomes


Curated BLAST

Searching in Pseudomonas fluorescens GW456-L13 (pseudo13_GW456_L13)

Found 7 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Pseudomonas fluorescens GW456-L13, or try another query

PfGW456L13_1695: Ornithine cyclodeaminase (EC
is similar to:

OCD_AGRT4 / Q59701: Ornithine cyclodeaminase; OCD; EC from Agrobacterium tumefaciens

27% id,
68% cov

OCD_AGRFC / P09773: Ornithine cyclodeaminase; OCD; EC from Agrobacterium fabrum
arcB / P09773: ornithine cyclodeaminase (EC from Agrobacterium fabrum

26% id,
68% cov

OCD_PSEPK / Q88H32: Ornithine cyclodeaminase; OCD; EC from Pseudomonas putida
Q88H32: ornithine cyclodeaminase (EC from Pseudomonas putida

25% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory